kim-api 2.4.2+e566ef5.GNU.GNU.
An Application Programming Interface (API) for the Knowledgebase of Interatomic Models (KIM).
 
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1#
2# KIM-API: An API for interatomic models
3# Copyright (c) 2013--2022, Regents of the University of Minnesota.
4# All rights reserved.
5#
6# Contributors:
7# Ryan S. Elliott
8# Ellad B. Tadmor
9#
10# SPDX-License-Identifier: LGPL-2.1-or-later
11#
12# This library is free software; you can redistribute it and/or
13# modify it under the terms of the GNU Lesser General Public
14# License as published by the Free Software Foundation; either
15# version 2.1 of the License, or (at your option) any later version.
16#
17# This library is distributed in the hope that it will be useful,
18# but WITHOUT ANY WARRANTY; without even the implied warranty of
19# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
20# Lesser General Public License for more details.
21#
22# You should have received a copy of the GNU Lesser General Public License
23# along with this library; if not, write to the Free Software Foundation,
24# Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
25#
26
27#
28# Release: This file is part of the kim-api-2.4.2 package.
29#
30
31
32=== kim-api-2.4.2 =============== 06Mar2026 ====================================
33
34* Improved logging and display of shared library paths
35
36* Fixed decoding bug for metadata files stored shared libraries
37
38* Improved documentation of GetNeighborList routines
39
40* Implemented item download retries in collections-management
41
42
43=== kim-api-2.4.1 =============== 15Apr2025 ====================================
44
45* Fix base64-encode to conform to cmake MAKE_C_IDENTIFIER behavior. This allows
46 encoded files to have names that start with a numeric digit.
47
48
49=== kim-api-2.4.0 =============== 12Mar2025 ====================================
50
51* Updated readthedocs settings
52
53* Updated github actions settings
54
55* Improvements to the collections management utility to improve error handling
56 of web queries and to fix an issue with finding installed drivers in the CWD
57 collection
58
59* Refactor handlling of parameter files to use base64 encoding instead of the
60 hex format of xxd (xxd is no longer a dependency for the package). This
61 allows for more efficient handling of large parameter files
62
63
64=== kim-api-2.3.0 =============== 17Mar2022 ====================================
65
66
67* Re-license from CDDL to LGPL-2.1-or-later
68
69* Fixed bug in c bindings for KIM_Collections_GetDirectoryName()
70
71* Transition from Travis CI to github actions
72
73* Add partial_particle_energy computation to utility_forces_numer_deriv
74
75* Fixes/Improvements to CMake build system
76
77
78=== kim-api-2.2.1 =============== 13Dec2020 ====================================
79
80* replace usage of localtime() with more secure localtime_r()
81
82* Enable Github code scanning
83
84* Refactor CI to move codecov support to centos docker CI and speedup macOS CI
85
86* Fix build support for coverage
87
88* Improvements and fixes in collections management
89
90* Use CMake CACHE variables so kim items can override package settings
91
92* Added discussion of standalone portable model CMakeLists.txt files to docs
93
94* Eliminate a compiler warning
95
96* Updates to support new version of fprettyify
97
98* Refactor libkim-api.pc file for more standard support for relocatable
99 behavior
100
101* Update travis-ci badge to use .com url
102
103* Implement more reliable method for bash scripts to find ORIGIN
104
105* Fix bugs in handling of -DKIM_API_SYSTEM_*_DIR=":/dir/..." build options; Add
106 CI testing for usage of these cases.
107
108* Correct release date for 2.2.0 in this file (Dec -> Nov)
109
110
111=== kim-api-2.2.0 =============== 18Nov2020 ====================================
112
113* The kim-api now supports Windows. Significant additions have been made to
114 the code and CMakeLists.txt files to support building kim-api and items on
115 Windows via Cygwin and MinGW; Build on Windows requires C++17.
116 (Thanks to Alex Stukowski)
117
118* kim-api is now "relocatable" after install. When installed to a non-standard
119 PREFIX (with the CMAKE_INSTALL_PREFIX CMake option) the entire install tree
120 may be moved, after install, to a new location in the file system and
121 everything should still work. This uses the RPATH, ${ORIGIN}, and similar
122 mechanisms and is functioning on Linux, macOS, and Windows. (This is tested
123 in the CI.)
124
125* Added 'portable-model' utility which prints out an edn dictionary containing
126 information about the features and properties of a portable model. This
127 includes the list of supported compute arguments and callbacks, the
128 parameters that the model makes available at runtime, etc. The utility can
129 be found in the LIBEXEC install directory.
130
131* Added Push/PopDefaultPrintFunction to KIM::Log interface to support Simulator
132 specific logging behavior such as the need for MPI communication to the head
133 node for I/O operations
134
135* Portable Model parameter files are now guaranteed to all be found in a single
136 subdirectory. This provides uniform handling of parameter files for both
137 Portable Models and Simulator Models. New GetParameterFileDirectoryName()
138 and GetParameterFileBasename() routines have been added and
139 GetParameterFileName() has been deprecated in the KIM::ModelDriverCreate
140 interface. A new GetParameterFileBaseName() routine has been added and
141 GetParameterFileName() has been deprecated in the KIM::SimulatorModel
142 interface.
143
144* Update documentation to point to new https://matsci.org discourse OpenKIM
145 forum
146
147* Switch to minimum version 3.10 for CMake
148
149* Complete refactor of CMake build details to improve exported target support.
150 This required an update to how kim-api items define their CMakeLists.txt
151 files. This version remains backward compatible with item CMakeLists.txt
152 files from older versions, but support for these is deprecated and will be
153 removed in v3.
154
155* Added human readable CMake configuration summary log (also a detailed
156 version) which is printed at the end of the cmake configuration step
157
158* Added new documentation page describing CMakeLists.txt files for the various
159 kim-api item types
160
161* Added native CMake implementation of xxd processing which allows the package
162 to be build on systems without the xxd executable
163
164* The collections-management utility will now use curl if wget is not available
165 on the system
166
167* Added a user-agent string to wget/curl commands so downloads and queries may
168 be identified as coming from the collections-management utility
169
170* Improve debugging of collections-management behavior with new CM_VERBOSITY
171 environment variable and added better error messages
172
173* Full refactoring of travis-ci, docker, and testing implementation
174
175* Added support for openSUSE, ubuntu, centos, and debian to testing via docker
176
177* Added ubuntu_cmake310 to explicitly test build with CMake version 3.10
178
179* Added MinGW travis-ci testing (Thanks to Alex Stukowski)
180
181* Added unique build identifier to default name for config and user collection
182 files
183
184* Refactor and improve handling of deprecated identifiers in configuration file
185
186* Check for and ignore empty kim standard metadata files
187
188* Adopted the `fprettify` Fortran code formatter and reformat all Fortran code
189 to conform to the kim-api settings (now in .fprettify.rc). Added scripts to
190 support git-commit hook
191
192* Refactor #includes to satisfy include-what-you-use linter
193
194* Refactor initialization of pointers as best practice
195
196* Fix a bug in C language binding for SimulatorModel Interface
197
198* Fix a bug associated with the edn-cpp use of exceptions
199
200* Fix issues identified by Coverity Scan
201
202* Various fixes and improvements
203
204* Various documentation updates
205
206
207=== kim-api-2.1.3 =============== 16Aug2019 ====================================
208
209* Adjust kim_collections_module to work around gfortran <= 4.8 bug.
210
211* Fix minor bug in collections-management.
212
213* Improve backward compatibility support for ~/.kim-api/config file format.
214
215* Fix to Fortran/C mapping of KIM_LENGTH_UNIT_BOHR.
216
217* Fixes to Fortran documentation and cross-references.
218
219* Added information/links to the top level README.md
220
221
222=== kim-api-2.1.2 =============== 29Jul2019 ====================================
223
224* Fixup Fortran kim_collections_module interfaces to be consistent with c/c++.
225
226* Fixup collections-management for portabability to dash.
227
228* Improve item-wrapper.cpp.in for more standard compliant MD, MO, SM behavior.
229
230* Improve zsh completion install behavior.
231
232* Fixup Fortran c_long communication and overflow behavior.
233
234* Add missing testing of interface in examples/simulators/collections-example.
235
236* Improve example/simulators to remove warnings.
237
238* Fix bug in KIM::SimulatorModel::Create().
239
240
241=== kim-api-2.1.1 =============== 24Jul2019 ====================================
242
243* Refactor 'kim-api-collections-management list' code for performance.
244
245* Update collections-management to use 'make -j2' for improved performance.
246
247* Improve kim-api-collections-management handling of passwords for use with
248 sudo. Specifically, support reading of passwords with whitespace and other
249 special characters.
250
251* Add zsh support to activate/deactivate scripts & zsh completions.
252
253* Fix c_long overflow (for i386 systems) bug in Fortran kim_collections_module.
254
255* Rework 'kim-api-collections-management install xxx OpenKIM' behavior. Now
256 installs the latest official release archive found at
257 https://s3.openkim.org/archives/collection/. This also greatly reduces the
258 total build and install time.
259
260* Redefine/refactor KIM::Collections behavior for finding item names.
261 Previously, a shared library file was found, opened, and checked for
262 validity. To significantly improve performance, now simply the existence of
263 the shared library file is used to identify available item names.
264
265* Redefine/refactor collections-management and collections-info to remove
266 '--with-version' option.
267
268* Fixup and improve Fortran example codes.
269
270* Added reopology.org graphic of available binaries to README.md.
271
272
273=== kim-api-2.1.0 =============== 16Jul2019 ====================================
274
275* Added new KIM::SimulatorModel interface providing programatic support to
276 simulators for packaging of parameter files, input commands, and metadata
277 necessary to run a simulator's native potentials.
278
279* Added new KIM::Collections interface (and the supporting extensible
280 enumerations KIM::Collection and KIM::CollectionItemTypes) providing
281 programatic access to the KIM API Collections and its configuration settings.
282 (This included a refactor and removal of old_KIM_API_DIRS.*.)
283
284* Convert from old 'models' to 'portable-models' nomenclature for KIM API
285 collections, including environment variables, configuration file, etc. (For
286 backward compatibility, the old configuration file format is still accepted.)
287
288* Added support for Metadata files to (internal) KIM::SharedLibrary and
289 programatic access to these files from the new KIM::Collections interface.
290
291* Automatically add standard openkim.org metadata files (kimspec.edn,
292 kimprovenance.edn, and kimcite-*.bib) to an item's shared library if they
293 exist.
294
295* Significant documentation updates to describe the new interfaces as well as
296 changing to the the Portable Model (PM) and Simulator Model (SM) terminology.
297
298* Added explicit documentation of Fortran interfaces for routines called by the
299 KIM API (ModelCreate, ModelDestroy, GetNeighborList, etc.).
300
301* Added mention of "Toy Models" to documentation.
302
303* Added data-type error checking for Portable Model parameter get/set routines;
304 Thanks to Daniel Schopf.
305
306* Bug fixes and improvements to kim-api-collections-management script
307
308* Added support for Include-What-You-Use (IWYU).
309
310* Added (internal) copy of edn-cpp parser for use with SMs.
311
312* Updated existing examples as necessary and added SM example.
313
314* Added new "unit-test" examples of simulators using the Collections and SM
315 interfaces.
316
317* Improvement to pkgconfig support; Thanks to Christoph Junghans.
318
319* Added new tests to CI, based on INSTALL file.
320
321* Updates create-package script and added run-cmds-from-install script.
322
323* Added .clang-format-hook-ignore file and mechanism (specifically for edn-cpp).
324
325* Updates to better support binary installation on various systems.
326
327* Added CDDL headers to files that did not have them.
328
329
330=== kim-api-2.0.2 =============== 28Mar2019 ====================================
331
332* Transition from 'kim-api-v2' naming to 'kim-api' for better alignment with
333 open source conventions
334
335* Added a simulator model example
336
337* Refactored support for simulator models: separated from models in collections.
338 Updated collections-management utility appropriately
339
340* Updated calls to scanf() for better security
341
342* Refactored old_KIM_API_DIRS.cpp to remove calls to 'exit()'
343
344* Added build options to set system collection directories
345
346* Added support for colon-separated list of directories for user and system
347 collections
348
349* Added '--version' flag to utilities
350
351* Update bash completion to work with old and new bash
352
353* Improve robustness of creat-package script
354
355* Updated badges to point to 'devel' branch & create-package to change to
356 'master' branch for release commit
357
358* Added coverity & codecov badges to README.md
359
360* Added vX.Y.Z-git tags to git repo and updated create-package script
361
362* Added NEWS file to Doxygen documentation & updated doxygen settings
363
364* Improved version build metadata string using "git describe"
365
366* Updated link flags for codecov
367
368
369=== kim-api-v2-2.0.1 ============ 27Feb2019 ====================================
370
371* Fix bug in KIM::SemVer::ParseSemVer()
372
373* Various minor fixes to address issues identified by Coverity Scan
374
375* Fix version string in libkim-api-v2.pc to conform to RPM schema
376
377* Added advanced CMake options for compilers used to build items after install
378
379* Added item install prefix CMake variables to cache; helps with packaging
380
381* Remove dead code in top level CMakeLists.txt
382
383
384=== kim-api-v2-2.0.0 ============ 06Feb2019 ====================================
385
386* Update main documentation.
387
388* Added function level documentation with cross-references and input/output
389 argument descriptions.
390
391* Added Known() member function to extensible enumerations.
392
393* Extensible enumeration default constructors now create uninitialized objects.
394
395* Rename C++ *.String() routines to *.ToString.
396
397* Added 'recursive' to all Fortran routines (for better thread safety).
398
399* Added support files for readthedocs.
400
401* Additions and fixes for collections-management utility.
402
403* Travis CI configuration updates.
404
405* Avoid some compiler warnings from clang.
406
407* Various CMake fixes/adjustments.
408
409* Various bug fixes in api code.
410
411
412=== kim-api-v2-2.0.0-beta.3 ===== 07Dec2018 ====================================
413
414* Updated and added examples to work with and demonstrate api changes/additions
415
416* Implemented new KIM::Model::IsRoutinePresent interface to facilitate
417 backward compatibility
418
419* Updated SpeciesName entries for recently renamed periodic table elements
420
421* Added WriteParameterizedModel Routine and assoc. code
422
423* Added Extension Routine to allow for non-standard extensions
424
425* Added Push/Pop Default Verbosity to KIM::Log
426
427* Changed Release default LogVerbosity to INFORMATION
428
429* Added ctest test for items to check that shared libraries can be opened
430
431* Improvements to Collections-Management behavior
432
433* Removed unnecessary header files
434
435* Updated travis.ci configuration
436
437* Refactored some backend implementation to improve maintainability, including
438 significant new KIM_SharedLibrarySchema interface
439
440* Improvements to CMake build system
441
442* Updated create-package script
443
444* Updated documentation
445
446
447=== kim-api-v2.0.0-beta.2 ======= 28Oct2018 ====================================
448
449* CMake build and test replaces custom Makefiles; added travis, gitlab CI
450 A big thank you to Richard Berger and Christoph Junghans for their major
451 contribution in getting the KIM API package converted to CMake.
452
453* Using standard pkg-config setup instead of custom kim-api-v2-build-config
454
455* Major restructuring of the Fortran bindings.
456
457* Make ModelRefresh and ModelComputeArgumentsDestroy functions optional
458
459* Add Model routine and callback prototypes in KIM_Functions header
460
461* Add a required unique name field for parameters.
462
463* Refactoring of neighbor list hints. The half-list hint had a fatal flaw
464 which required its removal.
465
466* Significant refactoring of the logging macros in C and C++. Complete removal
467 of all preprocessing for Fortran.
468
469* Redesign of release and packaging script and process.
470
471* Added a couple of new models that illustrate various features of the api.
472
473* Removed v1 to v2 porting guide.
474
475* "Summary of Differences Between kim-api-v1 and kim-api-v2" docs page now
476 contains tables with a complete listing of all kim-api identifiers in all
477 languages and their mappings between one-another.
478
479* Complete update of documentation. Rework and correct definition of
480 partialVirial and partialParticleVirial.
481
482* Added emacs cc-mode settings
483
484* Added clang-format settings, scripts, and git-hooks for C/C++
485
486* Complete review of C++, C, and Fortran bindings for consistency
487
488* Many other small and not-so-small changes.
489
490
491=== kim-api-v2.0.0-beta.1 ======= 07Jul2018 ====================================
492
493* Fix memory leak and uninitialized variables id'ed by coverity scan.
494
495* Update docs and porting guide for neighbor list hints changes.
496
497* Implement neighbor list hints (paddingNeighbor & halfList); update examples.
498
499* Add SetArgumentPointer(xxx * const ptr) to C++ bindings for consistency.
500
501* Add C++ LennardJones_Ar stand-alone model example.
502
503* Fix compatibility checking code in example simulators.
504
505* Update LennardJones612 example to use 1/2 list short-circuit mechanism.
506
507* Fix collections-info to set log verbosity to debug.
508
509* Use NULL consistently to initialize pointers in implemenation code.
510
511
512=== kim-api-v1.9.7 ============== 07Jul2018 ====================================
513
514* Check for errors from mkdir() in KIM_API_DIRS.cpp (id'ed by coverity scan).
515
516* Fix support for required-compute of forces in utility-forces-numer-deriv.
517
518* Fix identifiers in bash-completions.
519
520* Added --log option to CM 'list' command.
521
522* Use fixed seed for random number generator in utility-forces-numer-deriv.
523
524
525=== kim-api-v2.0.0-beta.0 ======= 26Jun2018 ====================================
526
527* Added a 'Guide for porting content from KIM API v1 to v2' to documentation
528
529* Documentation updates and improvements
530
531* Implemented extensive error checking and logging within the API
532
533* Separated Model object into ComputeArguments and Model
534
535* Many refinements and corrections to the new API
536
537
538=== kim-api-v1.9.6 ============== 26Jun2018 ====================================
539
540* Updated INSTALL file
541
542* Added 'install OpenKIM_with_history' and 'install --force' options to the
543 collections-management utility
544
545* Collections-management utility now cleanly handles an unaccessible openkim.org
546
547* Fixed bugs and made improvements to build system
548
549
550=== kim-api-v1.9.5 ============== 12May2018 ====================================
551
552* Update build system to support parallel builds (make -j).
553
554* Fixed bug in collections-management for "install OpenKIM" option.
555
556* Update INSTALL file
557
558
559=== kim-api-v1.9.4 ============== 09Apr2018 ====================================
560
561* Added '--interactive' option to collections-management utility.
562
563* Added Travis-CI support through GitHub.
564
565* Fixed bugs in collections-management utility.
566
567* Fixed bugs in build system.
568
569
570=== kim-api-v1.9.3 ============== 10Feb2018 ====================================
571
572* Major additions to options supported by the kim-api-v1-collections-management
573 utility. Added options include:
574
575 - list --with-version
576 - install CWD
577 - install environment
578 - reinstall
579 - remove-all
580
581 Additionally, items can now be installed from a source directory on the local
582 file system. Also, multiple items can be listed on a single command line.
583
584* Added a kim-api-v1-activate/deactivate utilities (available when installed to
585 non-standard locations). These add/remove to PATH and setup the bash
586 completions.
587
588* Added bash completions for user utilities
589
590* Added support for the sysconfdir variable to the build system
591
592* Updated utilities to more closely follow docopt.org specifications.
593
594* Model/Driver 'make install-*' now respect the DESTDIR environment variable.
595
596* Added support for Model/Driver install to the environment collection.
597
598* Add tracking of Parameterized Model parameter file file-names within the
599 generated model shared library.
600
601* Rename vc_* examples to utility_* to avoid confusion with new openkim.org
602 Verification Checks.
603
604* Various minor typo and bug fixes.
605
606
607=== kim-api-v2.0.0-alpha.0 ====== 18Jan2018 ====================================
608
609* Complete rewrite of the kim-api package. Released as "alpha" to solicit
610 feedback from the user community. Changes (possibly incompatible) will be
611 made based on user experience.
612
613* Major changes are summarized below.
614
615* NBCs have been eliminated.
616
617* KIM descriptor files have been eliminated.
618
619* A new memory management scheme has been adopted.
620
621* The api is now much more consistent within each language (C++, C, Fortran)
622 binding.
623
624* Improved logging facilities and error messages.
625
626* Added Doxygen generated documentation. (See the docs for more details on
627 this version of the kim-api and on the differences between v1 and v2.)
628
629
630=== kim-api-v1.9.2 ============== 08Oct2017 ====================================
631
632* Update scripts to use xz compressed tarballs (txz) instead of gz (tgz). This
633 is for compatibility with the recent removal of tgz support on openkim.org.
634
635
636=== kim-api-v1.9.1 ============== 27Sep2017 ====================================
637
638* Adjustment to build config flags to make cross-language compiling a bit more
639 flexible
640
641* Fix subtle Fortran implementation bug associated with non-short-circuit
642 conditional fortran behavior
643
644* Remove 'make install-set-default-to-v1' target and update INSTALL instructions
645 No longer have kim-api-build-config, etc. Now they explicitly include the
646 major version number. For example, kim-api-v1-build-config
647
648* Make some shell code more portable
649
650* Fixed some other installation details
651
652* Fixed missing semi-colon in makefile
653
654
655=== kim-api-v1.9.0 ============== 09Sep2017 ====================================
656
657* Added collections-management user utility to manage build and install
658 of OpenKIM Models and Model Drivers
659
660* Added support for "Simulator Models"
661
662* Dramatically simplify build system by removing supported scenarios.
663 + Removed static-link build option
664 + Removed "in-place" build scenario
665 + Added support and use of the libexec directory to distinguish between
666 user executable utilities and program executable utilities
667
668* Incorporate fix to configure script contributed by Christoph Junghans
669
670* Fix minor bugs in KIM_API_DIRS
671
672
673=== kim-api-v1.8.2 ============== 17Apr2017 ====================================
674
675* Fixed issues reaised by Tobias Brink (this==NULL; and `find` portability)
676
677
678=== kim-api-v1.8.1 ============== 28Mar2017 ====================================
679
680* Added additional deprecations in prep. for kim-api-v2.0.0
681
682* Fixed other minor bugs in create_package script and build-config.cpp
683
684* Fixed bug in Makefile.ParameterizedModel
685
686* Fixed formatting error in Makefiles created by build-config utility
687
688* Fixed bug in ex_model_Ar_P_MLJ_CLUSTER_C example model
689
690
691=== kim-api-v1.8.0 ============== 17Jan2017 ====================================
692
693* Deprecated significatant features and methods in prep. for kim-api-v2.0.0
694
695* Updated `build-config' utility with more flexible options
696
697* Removed `KIM_LINK = dynamic-link' option of build system
698
699* Modified/Fixed/Improved the configuration and build system
700
701* Added `collections-info' utility for querying environment variables,
702 user configuration files, and lists of models and model drivers in the
703 collections.
704
705
706=== kim-api-v1.7.3 ============== 02Jun2016 ====================================
707
708* Added a `configure' script for setting up Makefile.KIM_Config
709
710* Added support for environment-variable-collection
711
712* Added support for user_config_file_dir_name setting
713
714* Documentation update/improvements
715
716* Minor improvements to error messages
717
718* Added `make add-OpenKIM' feature
719
720* Added `make help' feature
721
722* Added release dates to NEWS file
723
724* Bug fixs
725
726
727=== kim-api-v1.7.2 ============== 25Jun2015 ====================================
728
729* Updated copyright years in files
730
731* Rewrite of INSTALL file to provide a significantly improved description and
732 instructions for build and installation of the KIM API
733
734* Fix error checking bug in ex_test_Ar_multiple_models Test
735
736* Improve the build and install process to better follow standard conventions
737 for library soname values.
738
739* Increased the maximum number of species supported by the example Tests to 200
740
741* Fixed bug in example Tests related to maximum number of supported species
742
743* Updated 'make clean' so that it removes all old library files in the source
744 directories
745
746* Fixed default make target for Parameterized Models
747
748* Fixed a bug in the installation process associated with the use of DESTDIR
749
750* Fixed a regular expression error in the build system
751
752* Fixed memory leak in internal KIM API code
753
754* Added sanity check to make sure that the 'xxd' utility is available
755
756* vc_forces_numer_deriv now outputs configuration energy
757
758* Documentation updates
759
760
761=== kim-api-v1.7.1 ============== 02Dec2014 ====================================
762
763* Bug fix for build of parameterized Models
764
765* Minor documentation update
766
767
768=== kim-api-v1.7.0 ============== 21Nov2014 ====================================
769
770* Use 'xxd' utility for encapsulation of KIM descriptor files and param. files
771
772* Added LINKSOPATH variable to build system for advanced system install options
773
774* Added KIM_API_get_kim_str_len() routine
775
776* Fix inconsistencies in ex_test_Ar_multiple_models
777
778* remove build system dependency on 'ed' program
779
780* Update 'make add-*' mechanism to use permanent url's for openkim.org items
781
782* Fix bugs and minor improvements to build system
783
784* Minor improvements to error messages
785
786* Updates to documentation
787
788
789=== kim-api-v1.6.3 ============== 18Aug2014 ====================================
790
791* Fixed install to recognize := and = in Makefiles
792
793* Removed use of non-standard strtok_r()
794
795* Fixes to ex_model_Cu_PF_Johnson & model_El_PF_Template.c
796
797* Fixes build system
798
799
800=== kim-api-v1.6.2 ============== 11Aug2014 ====================================
801
802* Correct KIM_API_Versions in template ".kim" files
803
804* Update make clean target for Model Drivers and Models
805
806* All template ".kim" files now generated from "legos" in git repo
807
808
809=== kim-api-v1.6.1 ============== 08Aug2014 ====================================
810
811* Updates to Model Driver and Model template files (in docs/templates/)
812
813* Changed the internal mechanism for handling parameter files to remove a
814 security hole associated with the use of tmpnam().
815
816* Revise kim.log entries to be more informative and clear
817
818* Bug fixes in build system, examples, and build system
819
820* Other small documentation and code improvements
821
822
823=== kim-api-v1.6.0 ============== 28Jul2014 ====================================
824
825* Documentation updates.
826
827* Model Driver Template and training model examples are now generated from a
828 single consistent "lego" file. Training examples are not included in
829 official release tarballs.
830
831* Add SemVer version routines to the KIM API. ".kim" files now require a
832 KIM_API_Version line to indicate the Model/Simulator compatibility.
833
834* Change terminology from "Particle Types" to "Particle Species" for clarity
835 and uniformity with the rest of the OpenKIM project. (See
836 KIM_API_get_model_species(), and similar routines.)
837
838* Changed KIM API routines that output strings. This avoids output of arrays
839 of strings, which are unnatural in C/C++ and allows for more natural handling
840 of string arguments in Fortran. (See: KIM_API_get_NBC_method(),
841 KIM_API_get_params(), and similar routines.)
842
843* Simulators and OpenKIM Tests now should use the "kim-api-build-config"
844 utility in order to obtain appropriate compiler and linker flags for building
845 against the KIM API.
846
847* Changed CCFLAGS to more standard CFLAGS Make variable.
848
849* Build system now provides ability to download Model Drivers and Models
850 directly from openkim.org.
851
852* Change package name from "openkim-api" to "kim-api".
853
854* Rename this file (CHANGELOG) to NEWS, to better follow convention.
855
856* A complete restructuring of the package directory layout has been performed
857 in order to conform to more standard practices and to better reflect the
858 intended behavior and use of the package components.
859
860* Model Drivers now specify the name of their ".kim" file template in their
861 Makefile. The conventional name for these files now ends in ".kim.tpl".
862
863* Model ".kim" file name is now specified in the Makefile and can be anything
864 the developer desires.
865
866* Remove deprecated KIM_API_init() routine.
867
868* Remove deprecated Fortran Cray pointer support.
869
870
871=== openkim-api-v1.5.0 ========== 16Jul2014 ====================================
872
873* Documentation updates, including an extensive discussion of the installation
874 process in INSTALL.
875
876* Update examples to use KIM_API_file_init() and name their ".kim" file
877 "descriptor.kim" in accordance with the new convention of the openkim.org
878 processing pipeline.
879
880* Deprecate KIM_API_init() and add KIM_API_file_init() to replace it as the
881 primary openkim.org Tests should initialize the KIM API and specify their KIM
882 descriptor files.
883
884* Portability fixes for the make system
885
886* Move away from naming various files based on the item (Model Driver, Model,
887 Test) name. Instead establish standard names for each item type.
888
889* Added Makefile.Version to provided the make system with version information
890 and set policy (based on SemVer 2.0.0) for how, when, and why to update the
891 version.
892
893* Significant updates to the make system. Primarily associated with
894 installation of the KIM API to a system-wide location, and its use once
895 installed there.
896
897
898=== openkim-api-v1.4.1 ========== 19May2014 ====================================
899
900
901* Added additional compiler flags to support differences between GCC and INTEL
902
903* Fixed examples that used set_data when they should have used set_method.
904
905* Added LDLIBS flag in split functionality of LDFLAGS variable more
906 appropriately. This is more inline with standard Makefile practice.
907
908* Now 32Bit and 64Bit settings add -m32 and -m64 compiler flags automatically
909
910* Added KIM_MAKE_VERBOSITY setting to Make system
911
912* Updates to README, INSTALL, and Templates
913
914* Make system improvements and fixes
915
916* Added checks for known buggy compilers
917
918* Updated and corrected documentation
919
920
921=== openkim-api-v1.4.0 ========== 26Feb2014 ====================================
922
923
924* Improvements to robustness and efficiency of MAKE_SYSTEM
925
926* Updated copyright years in files
927
928* Updated documentation to reflect new Fortran 2003 bindings
929
930* Converted DOCS/TEMPLATES/ to Fortran 2003 bindings
931
932* Made significant improvement to neighbor list handling in example Tests
933
934* Made some minor improvements to example Models and Model Drivers
935
936* Converted example Models, Model Drivers, and Tests to Fortran 2003 bindings
937
938* DEPRECATED all Cray pointer bindings and associated code
939
940* Added Fortran 2003 bindings
941
942
943=== openkim-api-v1.3.1 ========== 20Jan2014 ====================================
944
945
946* Fixes to make system to avoid undefined `directoryPATH()' symbol with INTEL
947 compilers and CYGWIN systems
948
949* Added notes to INSTALL for gun 4.4 and CYGWIN systems
950
951* Fixes to make system to work with gnu make 3.81 (avoid segmentation faults)
952
953
954=== openkim-api-v1.3.0 ========== 10Dec2013 ====================================
955
956
957* change KIM_KEY_STRING_LENGTH to 128 (despite git log that says 257)
958
959* Split .kim files and parameter files into chunks to stay under C++ supported
960 string literal length.
961
962* Fix for dynamic-link compile option
963
964* Some minor code fixes/updates and documentation updates
965
966* Updates to `make install'
967
968* Fix bug in FCC example Tests
969
970* Fix/Update Templates
971
972* Fix a bug in Makefile.Test
973
974* Added KIM_API_get_rank and KIM_API_get_rank_by_index functions
975
976
977=== openkim-api-v1.2.3 ========== 15Nov2013 ====================================
978
979
980* Fixed bugs in the KIM_API_string_init() function (discovered by Daniel Schopf)
981
982* Fixed a memory leak in the api (patch provided by Tobias Brink)
983
984* Moved `include "KIM_API_DIRS.h"' from KIM_API.h to KIM_API.cpp. This ensures
985 that this header file does not need to be installed by the `make install'
986 command.
987
988* Changes to Makefiles to improve portability (of `make uninstall')
989
990* Some minor changes to api code to remove compiler warnings from some compilers
991
992
993=== openkim-api-v1.2.2 ========== 17Sep2013 ====================================
994
995
996* Improved speed of make system when many Models/Tests (and Drivers) exist
997
998* Improved an aspect of the api's error checking/reporting
999
1000
1001=== openkim-api-v1.2.1 ========== 21Jul2013 ====================================
1002
1003
1004* Reverted to gnu make v3.81 from v3.82 to better represent actual needs.
1005
1006
1007=== openkim-api-v1.2.0 ========== 12Jul2013 ====================================
1008
1009
1010* Documentation updates.
1011
1012* Various bug fixes.
1013
1014* Added support for searching ${HOME}/.kim/ and ./ for Models and Model Drivers
1015 when the package is installed via the `make install' command.
1016
1017* Added install and uninstall targets to the Make system.
1018
1019* Now the build system (in dynamic-load and dynamic-link modes) hides all
1020 symbols in the Model Driver and Model libraries except for the model_init()
1021 function and the Model's kim descriptor string. This means that there is no
1022 need to worry about symbol clashes between Models, Model Drivers, or Tests.
1023
1024* Implemented dynamic-load, dynamic-link, and static-link build options.
1025
1026* Make system now provides only summary information on the build process. This
1027 makes the progress easier to understand. To see the actual build commands
1028 use `make -n'.
1029
1030* Removed `integer*8' and changed `real' and `real*8' to `float' and `double'.
1031
1032* Now use -g, -Wall, and -pedantic by default for all compilations.
1033
1034* Changed model_init() function conventions to simplify the scheme. This also
1035 resulted in the removal of the Model or Test name from the descriptor files.
1036
1037* Added the openkim-api-descriptor-file-match utility.
1038
1039* Completely rewrote and streamlined the openkim-api Make system
1040
1041* Changed directory names from trailing `s' to trailing `S'.
1042
1043* Updated example Tests and Models to use the new get/set method routines.
1044
1045* Added `const' to api string parameters to avoid warnings in Models and Tests
1046
1047* Added get/set method routines to properly transfer pointers to functions
1048 or methods via the api.
1049
1050* Added support to examples for NEIGH_RVEC_H.
1051
1052* Added the NEIGH_RVEC_H NBC method.
1053
1054* Added ex_free_cluster_CLUSTER_memory F90 Test which manages its own memory.
1055
1056* Added ex_model_Cu_PF_Johnson C pair-functional model and template.
1057
1058* Updates and bug fixes in example Models.
1059
1060* Bug fixes for vc_forces_numer_deriv and added vc_config_ener_forces and
1061 vc_forces_delta to the distribution.
1062
1063
1064=== openkim-api-v1.1.1 ========== 19Aug2012 ====================================
1065
1066
1067* Added run_forces_numer_deriv_for_all_models script that will run and
1068 summarize the results of vc_forces_numer_deriv for all available Models.
1069
1070* Added vc_forces_numer_deriv "verification check" that can be used with any
1071 Model to check the consistency of its computed forces with a numerical
1072 derivative based on the Model's energy.
1073
1074* Fixed a bug in the MI_OPBC_* support for ex_model_Ne_P_fastLJ
1075
1076* Fixed a bug in the make system that occurred when using static linking that
1077 would cause some Models to be incorrectly identified as "unknown"
1078
1079* ex_test_*_free_cluster and ex_test_*_free_cluster_stiff now support CLUSTER
1080 NBC (which means they work with ALL NBC methods)
1081
1082* Documentation updates
1083
1084* Updated 32/64 bit switching in Fortran code for easier maintenance
1085
1086* Moved library compile flags to end of command line to make sure all libraries
1087 are correctly associated with the appropriate .so files
1088
1089* Cleaned up ex_model_driver_P_* and ex_model_Ne_P_fastLJ to simplify memory
1090 management and PARAM_* handling
1091
1092
1093=== openkim-api-v1.1.0 ========== 12Jul2012 ====================================
1094
1095
1096* Documentation updates
1097
1098* Introduced the use of THIS_FILE_NAME in Fortran examples instead of __FILE__.
1099 This allows for easily setting the value of THIS_FILE_NAME to something
1100 appropriate (short) when the default preprocessor value of __FILE__ is longer
1101 that 132 characters (the max line length for Fortran)
1102
1103* Changed KIM standard time unit from `fs' to `ps' to be consistent with LAMMPS
1104 `metal' unit system
1105
1106* Changed KIM_COMPUTE and KIM_NOT_COMPUTE to KIM_COMPUTE_TRUE and
1107 KIM_COMPUTE_FALSE, respectively
1108
1109* Removed KIM_API_MAX_NEIGHBORS; the api no longer puts any restriction on the
1110 number of neighbors for an atom
1111
1112* Updated api and examples to always `return' with an error code instead of
1113 `exit' or `stop'. This allows the Test to handle errors and is a better
1114 convention for error handling
1115
1116* Added KIM_STATUS_MODEL_UNSUPPORTED_CONFIGURATION for cases where a
1117 configuration is identified at run time as unsupported
1118
1119* Removed requirement for a trailing `/' in environment variables (such as
1120 $KIM_DIR)
1121
1122* Added make warning if `make' is invoked from a Model directory when static
1123 linking is being used.
1124
1125* Added `make examples-force' target
1126
1127* `make examples' only copies files; it no longer also compiles everything
1128
1129* Changed all call-back interfaces (model_init, model_reinit, model_compute,
1130 model_destroy) to be consistent: integer functions (in Fortran speak). Also
1131 updated examples and templates to conform to this new interface.
1132
1133* Added get_model_partcl_typs() and get_test_partcl_type() service routines
1134 Removed get_partcl_types() routine.
1135
1136* Added ability of a Model/Model Driver to set its particle type codes at
1137 runtime
1138
1139* Added support for .kimignore files in MODELS, MODEL_DRIVERS, and TESTS
1140 directories
1141
1142* Added `Temperature' to standard.kim for "temperature dependent" Models
1143
1144* New Model Driver interface supports reading from any number of files (not
1145 strings)
1146
1147* Support for 001-999 particle types in Model Drivers
1148
1149* Use $(strip ) function to avoid difficult trailing space problem in make files
1150
1151* Rearranged and simplify compiler settings files
1152 (KIM_API/*_compiler_settings.mk)
1153
1154* Changed CPPLIBFLAG to LINKLIBFLAG in Make files to better represent its use
1155
1156* Many improvements to Make-system portability
1157
1158* Carriage returns are now striped from kim and parameter files during Make
1159
1160* Improvements to the vc_forces_numer_deriv verification check
1161
1162* Bug fixes for KIM_API_init() matching
1163
1164* Significant clean-up/rearrangement of core api code
1165
1166
1167=== openkim-api-v1.0.1 ========== 25Feb2012 ====================================
1168
1169
1170* Bug fix to ex_model_Ne_P_fastLJ
1171
1172* Bug fix to ex_model_Al_PF_ErcolessiAdams (and associated template file)
1173
1174* Documentation updates
1175
1176
1177=== openkim-api-v1.0.0 ========== 22Feb2012 ====================================
1178
1179
1180* Moved all examples to EXAMPLES directory and added `make examples' target.
1181
1182* Renamed all example Model Drivers, Models, and Tests. Now have `ex_' prefix.
1183
1184* Renamed nearly all API functions to improve readability and comprehension.
1185
1186* Changed KIM_API_get_half_neigh and KIM_API_get_full_neigh to just
1187 KIM_API_get_neigh.
1188
1189* Total re-work of unit handling for the API.
1190
1191* Added KIM_API_model_info() function for Tests to use for discovering what a
1192 Model supports.
1193
1194* Added KIM_API_getm_* and KIM_API_setm_* routines to get/set multiple arguments
1195 in one function call.
1196
1197* Added KIM_API_sting_init() for use by Tests that generate their KIM descriptor
1198 file "on-the-fly".
1199
1200* Added process_dEdr and process_dE2dr2 approach for calculating general
1201 properties. Currently automatic support for `virial', `particleVirial', and
1202 `hessian' is available.
1203
1204* Added "unsymmetric half neighbor lists" (numberContributingParticles).
1205
1206* Added model/test buffers for use by Model and Test, respectively.
1207
1208* Improvements in dynamic linking setup.
1209
1210* Examples additions, improvements, and bug fixes.
1211
1212* Bug fixes.
1213
1214
1215=== openkim-api-v0.2.0 ========== 15Sep2011 ====================================
1216
1217
1218* Updated documentation
1219
1220* Added KIM_API_report_error() service function and updated all examples
1221 and templates to use this function.
1222
1223* Added KIMstatus.h which contains definitions of KIM status codes.
1224
1225* Added KIM_API_status_msg() service routine to return a string describing a
1226 given status code.
1227
1228* Updated messages printed to kim.log file to be more informative.
1229
1230* Model KIM descriptor files are now incorporated into the Model's binary
1231 library file. This means that the file is no longer required at run time and
1232 that the Model must be recompiled after changes to the descriptor file.
1233
1234* Added Model Driver Templates
1235
1236* Added two Model Drivers and four Models based on the Model Drivers
1237
1238* Removed example model_Ar_P_MMorse in favor of the Morse Driver and its Models
1239
1240* Added support for Model Drivers
1241
1242* Bug fixes
1243
1244
1245=== openkim-api-v0.1.2 ========== 22Aug2011 ====================================
1246
1247
1248* Fixed a number of bugs in the examples related to running on 64bit machines
1249
1250* Fixed a bug in kim_api_get_nbc_method_f() related to running on 64bit
1251 machines
1252
1253
1254=== openkim-api-v0.1.1 ========== 16Aug2011 ====================================
1255
1256
1257* Fixed memory handling bug associated with the service functions
1258 KIM_API_get_listAtomTypes()
1259 KIM_API_get_listParams()
1260 KIM_API_get_listFreeParams()
1261 KIM_API_get_listFixedParams()
1262 KIM_API_get_NBC_method()
1263
1264* Fixed bug in test_**_free_cluster.F90
1265
1266* Renamed `README.git' to `README_GIT' to avoid confusion with the
1267 git convention that the extension `.git' refers to a bare repository
1268
1269
1270=== openkim-api-v0.1.0 ========== 08Aug2011 ====================================
1271
1272
1273* Added TEMPLATE files to help users create their own KIM Models.
1274
1275* Added a number of example Models and Tests to help users understand how to
1276 implement their own openkim-api compliant codes.
1277
1278* Added support for ATOM/PARTICLE types
1279
1280* Added support for Models to publish their parameters
1281
1282* Added support for Models to define a `reinit' function for use when their
1283 parameters are changed by a Test.
1284
1285* Improved the Makefile system in general (although, more needs to be done)
1286
1287* Added support for neighbor list and boundary conditions (NBC)
1288
1289* Added support for dynamic linking
1290
1291* Updated documentation
1292
1293* Added documentation to the standard.kim file which now describes in detail
1294 the format and content of KIM descriptor files.
1295
1296* Added README files to every directory. These files provide a short
1297 (hopefully helpful) description of the contents of the directory)
1298
1299
1300=== openkim-api-v0.0.0 =========================================================
1301
1302
1303The initial release of the openkim-api package. This was first made available
1304to participants at the Inaugural Openkim Workshop held in San Diego, CA on
1305Feb. 26-27, 2011.