ex_test_Ar_fcc_cluster.c

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/*
 *
 * CDDL HEADER START
 *
 * The contents of this file are subject to the terms of the Common Development
 * and Distribution License Version 1.0 (the "License").
 *
 * You can obtain a copy of the license at
 * http://www.opensource.org/licenses/CDDL-1.0.  See the License for the
 * specific language governing permissions and limitations under the License.
 *
 * When distributing Covered Code, include this CDDL HEADER in each file and
 * include the License file in a prominent location with the name LICENSE.CDDL.
 * If applicable, add the following below this CDDL HEADER, with the fields
 * enclosed by brackets "[]" replaced with your own identifying information:
 *
 * Portions Copyright (c) [yyyy] [name of copyright owner]. All rights reserved.
 *
 * CDDL HEADER END
 *

 *
 * Copyright (c) 2013--2019, Regents of the University of Minnesota.
 * All rights reserved.
 *
 * Contributors:
 *    Ryan S. Elliott
 *    Stephen M. Whalen
 *
 */


#include "KIM_SimulatorHeaders.h"
#include <math.h>
#include <stdio.h>
#include <stdlib.h>

#define TRUE 1
#define FALSE 0

#define NAMESTRLEN 128

#define FCCSPACING 5.260
#define DIM 3
#define NCELLSPERSIDE 2
#define NCLUSTERPARTS                                  \
  (4 * (NCELLSPERSIDE * NCELLSPERSIDE * NCELLSPERSIDE) \
   + 6 * (NCELLSPERSIDE * NCELLSPERSIDE) + 3 * (NCELLSPERSIDE) + 1)


#define MY_ERROR(message)                                            \
  {                                                                  \
    printf("* Error : \"%s\" %d:%s\n", message, __LINE__, __FILE__); \
    exit(1);                                                         \
  }

#define MY_WARNING(message)                                            \
  {                                                                    \
    printf("* WARNING : \"%s\" %d:%s\n", message, __LINE__, __FILE__); \
  }

/* Define neighborlist structure */
typedef struct
{
  double cutoff;
  int numberOfParticles;
  int * NNeighbors;
  int * neighborList;
} NeighList;

/* Define prototypes */
void fcc_cluster_neighborlist(int half,
                              int numberOfParticles,
                              double * coords,
                              double cutoff,
                              NeighList * nl);

int get_cluster_neigh(void * const dataObject,
                      int const numberOfNeighborLists,
                      double const * const cutoffs,
                      int const neighborListIndex,
                      int const particleNumber,
                      int * const numberOfNeighbors,
                      int const ** const neighborsOfParticle);

void create_FCC_cluster(double FCCspacing, int nCellsPerSide, double * coords);


/* Main program */
int main()
{
  /* Local variable declarations */
  double const MinSpacing = 0.8 * FCCSPACING;
  double const MaxSpacing = 1.2 * FCCSPACING;
  double const SpacingIncr = 0.025 * FCCSPACING;
  double CurrentSpacing;
  double cutpad = 0.75; /* Angstroms */
  double force_norm;
  int i;
  int error;


  /* KIM variable declarations */
  KIM_Model * model;
  /* model inputs */
  int numberOfParticles_cluster = NCLUSTERPARTS;
  int speciesIsSupported;
  int particleSpecies_cluster_model[NCLUSTERPARTS];
  int particleContributing_cluster_model[NCLUSTERPARTS];
  double coords_cluster[NCLUSTERPARTS][DIM];
  NeighList nl_cluster_model;
  /* model outputs */
  int number_of_neighbor_lists_cluster_model;
  double influence_distance_cluster_model;
  double const * cutoff_cluster_model;
  double energy_cluster_model = 0.0;
  double forces_cluster[NCLUSTERPARTS * DIM];

  char modelname[NAMESTRLEN];
  int requestedUnitsAccepted;
  int numberOfModelRoutineNames;
  KIM_ModelRoutineName modelRoutineName;
  int present;
  int required;
  int modelArCode;
  int numberOfComputeArgumentNames;
  KIM_ComputeArguments * computeArguments;
  KIM_ComputeArgumentName computeArgumentName;
  KIM_SupportStatus supportStatus;
  int numberOfComputeCallbackNames;
  KIM_ComputeCallbackName computeCallbackName;

  /* Get KIM Model names */
  printf("Please enter valid KIM Model name: \n");
  error = scanf("%s", modelname);
  if (1 != error) { MY_ERROR("Unable to read model name"); }

  /* initialize the model */
  error = KIM_Model_Create(KIM_NUMBERING_zeroBased,
                           KIM_LENGTH_UNIT_A,
                           KIM_ENERGY_UNIT_eV,
                           KIM_CHARGE_UNIT_e,
                           KIM_TEMPERATURE_UNIT_K,
                           KIM_TIME_UNIT_ps,
                           modelname,
                           &requestedUnitsAccepted,
                           &model);
  if (error) MY_ERROR("KIM_create_model_interface()");

  /* Check for compatibility with the model */
  if (!requestedUnitsAccepted) MY_ERROR("Must adapt to model units");

  /* Check that we know about all required routines */
  KIM_MODEL_ROUTINE_NAME_GetNumberOfModelRoutineNames(
      &numberOfModelRoutineNames);
  for (i = 0; i < numberOfModelRoutineNames; ++i)
  {
    KIM_MODEL_ROUTINE_NAME_GetModelRoutineName(i, &modelRoutineName);

    error = KIM_Model_IsRoutinePresent(
        model, modelRoutineName, &present, &required);
    if (error) { MY_ERROR("Unable to get ModelRoutineName."); }

    if ((present == TRUE) && (required == TRUE))
    {
      if (!(KIM_ModelRoutineName_Equal(modelRoutineName,
                                       KIM_MODEL_ROUTINE_NAME_Create)
            || KIM_ModelRoutineName_Equal(
                modelRoutineName, KIM_MODEL_ROUTINE_NAME_ComputeArgumentsCreate)
            || KIM_ModelRoutineName_Equal(modelRoutineName,
                                          KIM_MODEL_ROUTINE_NAME_Compute)
            || KIM_ModelRoutineName_Equal(modelRoutineName,
                                          KIM_MODEL_ROUTINE_NAME_Refresh)
            || KIM_ModelRoutineName_Equal(
                modelRoutineName,
                KIM_MODEL_ROUTINE_NAME_ComputeArgumentsDestroy)
            || KIM_ModelRoutineName_Equal(modelRoutineName,
                                          KIM_MODEL_ROUTINE_NAME_Destroy)))
      { MY_ERROR("Unknown required ModelRoutineName found."); }
    }
  }

  /* check species */
  error = KIM_Model_GetSpeciesSupportAndCode(
      model, KIM_SPECIES_NAME_Ar, &speciesIsSupported, &modelArCode);
  if ((error) || (!speciesIsSupported))
  { MY_ERROR("Species Ar not supported"); }

  error = KIM_Model_ComputeArgumentsCreate(model, &computeArguments);
  if (error) { MY_ERROR("KIM_Model_ComputeArgumentsCreate"); }

  /* check arguments */
  KIM_COMPUTE_ARGUMENT_NAME_GetNumberOfComputeArgumentNames(
      &numberOfComputeArgumentNames);
  for (i = 0; i < numberOfComputeArgumentNames; ++i)
  {
    error = KIM_COMPUTE_ARGUMENT_NAME_GetComputeArgumentName(
        i, &computeArgumentName);
    if (error) MY_ERROR("can't get argument name");
    error = KIM_ComputeArguments_GetArgumentSupportStatus(
        computeArguments, computeArgumentName, &supportStatus);
    if (error) MY_ERROR("can't get argument supportStatus");

    /* can only handle energy and force as a required arg */
    if (KIM_SupportStatus_Equal(supportStatus, KIM_SUPPORT_STATUS_required))
    {
      if ((KIM_ComputeArgumentName_NotEqual(
              computeArgumentName, KIM_COMPUTE_ARGUMENT_NAME_partialEnergy))
          && (KIM_ComputeArgumentName_NotEqual(
              computeArgumentName, KIM_COMPUTE_ARGUMENT_NAME_partialForces)))
      { MY_ERROR("unsupported required argument"); }
    }

    /* must have energy and forces */
    if ((KIM_ComputeArgumentName_Equal(computeArgumentName,
                                       KIM_COMPUTE_ARGUMENT_NAME_partialEnergy))
        || (KIM_ComputeArgumentName_Equal(
            computeArgumentName, KIM_COMPUTE_ARGUMENT_NAME_partialForces)))
    {
      if (!((KIM_SupportStatus_Equal(supportStatus,
                                     KIM_SUPPORT_STATUS_required))
            || (KIM_SupportStatus_Equal(supportStatus,
                                        KIM_SUPPORT_STATUS_optional))))
      { MY_ERROR("energy or forces not available"); }
    }
  }

  /* check call backs */
  KIM_COMPUTE_CALLBACK_NAME_GetNumberOfComputeCallbackNames(
      &numberOfComputeCallbackNames);
  for (i = 0; i < numberOfComputeCallbackNames; ++i)
  {
    error = KIM_COMPUTE_CALLBACK_NAME_GetComputeCallbackName(
        i, &computeCallbackName);
    if (error) MY_ERROR("can't get call back name");
    error = KIM_ComputeArguments_GetCallbackSupportStatus(
        computeArguments, computeCallbackName, &supportStatus);
    if (error) MY_ERROR("can't get call back supportStatus");

    /* cannot handle any "required" call backs */
    if (KIM_SupportStatus_Equal(supportStatus, KIM_SUPPORT_STATUS_required))
    { MY_ERROR("unsupported required call back"); }
  }

  /* We're compatible with the model.  Let's do it. */

  error = KIM_ComputeArguments_SetArgumentPointerInteger(
              computeArguments,
              KIM_COMPUTE_ARGUMENT_NAME_numberOfParticles,
              &numberOfParticles_cluster)
          || KIM_ComputeArguments_SetArgumentPointerInteger(
              computeArguments,
              KIM_COMPUTE_ARGUMENT_NAME_particleSpeciesCodes,
              particleSpecies_cluster_model)
          || KIM_ComputeArguments_SetArgumentPointerInteger(
              computeArguments,
              KIM_COMPUTE_ARGUMENT_NAME_particleContributing,
              particleContributing_cluster_model)
          || KIM_ComputeArguments_SetArgumentPointerDouble(
              computeArguments,
              KIM_COMPUTE_ARGUMENT_NAME_coordinates,
              (double *) &coords_cluster)
          || KIM_ComputeArguments_SetArgumentPointerDouble(
              computeArguments,
              KIM_COMPUTE_ARGUMENT_NAME_partialEnergy,
              &energy_cluster_model)
          || KIM_ComputeArguments_SetArgumentPointerDouble(
              computeArguments,
              KIM_COMPUTE_ARGUMENT_NAME_partialForces,
              (double *) &forces_cluster);
  if (error) MY_ERROR("KIM_setm_data");
  KIM_ComputeArguments_SetCallbackPointer(
      computeArguments,
      KIM_COMPUTE_CALLBACK_NAME_GetNeighborList,
      KIM_LANGUAGE_NAME_c,
      (KIM_Function *) &get_cluster_neigh,
      &nl_cluster_model);

  KIM_Model_GetInfluenceDistance(model, &influence_distance_cluster_model);
  KIM_Model_GetNeighborListPointers(model,
                                    &number_of_neighbor_lists_cluster_model,
                                    &cutoff_cluster_model,
                                    NULL); /* ignoring hint */
  if (number_of_neighbor_lists_cluster_model != 1)
    MY_ERROR("too many neighbor lists");

  /* setup particleSpecies */
  error
      = KIM_Model_GetSpeciesSupportAndCode(model,
                                           KIM_SPECIES_NAME_Ar,
                                           &speciesIsSupported,
                                           &(particleSpecies_cluster_model[0]));
  if (error) MY_ERROR("KIM_get_species_code");
  for (i = 1; i < NCLUSTERPARTS; ++i)
    particleSpecies_cluster_model[i] = particleSpecies_cluster_model[0];

  /* setup particleContributing */
  for (i = 0; i < NCLUSTERPARTS; ++i)
  {
    particleContributing_cluster_model[i] = 1; /* all particles contribute */
  }

  /* setup neighbor lists */
  /* allocate memory for list */
  nl_cluster_model.numberOfParticles = NCLUSTERPARTS;
  nl_cluster_model.NNeighbors = (int *) malloc(NCLUSTERPARTS * sizeof(int));
  if (NULL == nl_cluster_model.NNeighbors) MY_ERROR("malloc unsuccessful");

  nl_cluster_model.neighborList
      = (int *) malloc(NCLUSTERPARTS * NCLUSTERPARTS * sizeof(int));
  if (NULL == nl_cluster_model.neighborList) MY_ERROR("malloc unsuccessful");

  /* ready to compute */
  printf("This is Test  : ex_test_Ar_fcc_cluster\n");
  printf("---------------------------------------------------------------------"
         "-----------\n");
  printf("Results for KIM Model : %s\n", modelname);

  printf("%20s, %20s, %20s\n", "Energy", "Force Norm", "Lattice Spacing");
  for (CurrentSpacing = MinSpacing; CurrentSpacing < MaxSpacing;
       CurrentSpacing += SpacingIncr)
  {
    /* update coordinates for cluster */
    create_FCC_cluster(CurrentSpacing, NCELLSPERSIDE, &(coords_cluster[0][0]));
    /* compute neighbor lists */
    fcc_cluster_neighborlist(0,
                             NCLUSTERPARTS,
                             &(coords_cluster[0][0]),
                             (*cutoff_cluster_model + cutpad),
                             &nl_cluster_model);

    /* call compute functions */
    error = KIM_Model_Compute(model, computeArguments);
    if (error) MY_ERROR("KIM_model_compute");

    /* compute force norm */
    force_norm = 0.0;
    for (i = 0; i < DIM * numberOfParticles_cluster; ++i)
    { force_norm += forces_cluster[i] * forces_cluster[i]; }
    force_norm = sqrt(force_norm);

    /* print the results */
    printf("%20.10e, %20.10e, %20.10e\n",
           energy_cluster_model,
           force_norm,
           CurrentSpacing);
  }

  error = KIM_Model_ComputeArgumentsDestroy(model, &computeArguments);
  if (error) { MY_ERROR("Unable to destroy compute arguments"); }

  /* free memory of neighbor lists */
  free(nl_cluster_model.NNeighbors);
  free(nl_cluster_model.neighborList);

  /* free pkim objects */
  KIM_Model_Destroy(&model);

  /* everything is great */
  return 0;
}

void create_FCC_cluster(double FCCspacing, int nCellsPerSide, double * coords)
{
  /* local variables */
  double FCCshifts[4][DIM];
  double latVec[DIM];
  int a;
  int i;
  int j;
  int k;
  int m;
  int n;

  /* create a cubic FCC cluster of parts */
  FCCshifts[0][0] = 0.0;
  FCCshifts[0][1] = 0.0;
  FCCshifts[0][2] = 0.0;
  FCCshifts[1][0] = 0.5 * FCCspacing;
  FCCshifts[1][1] = 0.5 * FCCspacing;
  FCCshifts[1][2] = 0.0;
  FCCshifts[2][0] = 0.5 * FCCspacing;
  FCCshifts[2][1] = 0.0;
  FCCshifts[2][2] = 0.5 * FCCspacing;
  FCCshifts[3][0] = 0.0;
  FCCshifts[3][1] = 0.5 * FCCspacing;
  FCCshifts[3][2] = 0.5 * FCCspacing;

  a = 0;
  for (i = 0; i < nCellsPerSide; ++i)
  {
    latVec[0] = ((double) i) * FCCspacing;
    for (j = 0; j < nCellsPerSide; ++j)
    {
      latVec[1] = ((double) j) * FCCspacing;
      for (k = 0; k < nCellsPerSide; ++k)
      {
        latVec[2] = ((double) k) * FCCspacing;
        for (m = 0; m < 4; ++m)
        {
          for (n = 0; n < DIM; ++n)
          { coords[a * DIM + n] = latVec[n] + FCCshifts[m][n]; }
          a++;
        }
      }
      /* add in the remaining three faces */
      /* pos-x face */
      latVec[0] = NCELLSPERSIDE * FCCspacing;
      latVec[1] = ((double) i) * FCCspacing;
      latVec[2] = ((double) j) * FCCspacing;
      for (n = 0; n < DIM; ++n) { coords[a * DIM + n] = latVec[n]; }
      a++;
      for (n = 0; n < DIM; ++n)
      { coords[a * DIM + n] = latVec[n] + FCCshifts[3][n]; }
      a++;
      /* pos-y face */
      latVec[0] = ((double) i) * FCCspacing;
      latVec[1] = NCELLSPERSIDE * FCCspacing;
      latVec[2] = ((double) j) * FCCspacing;
      for (n = 0; n < DIM; ++n) { coords[a * DIM + n] = latVec[n]; }
      a++;
      for (n = 0; n < DIM; ++n)
      { coords[a * DIM + n] = latVec[n] + FCCshifts[2][n]; }
      a++;
      /* pos-z face */
      latVec[0] = ((double) i) * FCCspacing;
      latVec[1] = ((double) j) * FCCspacing;
      latVec[2] = NCELLSPERSIDE * FCCspacing;
      for (n = 0; n < DIM; ++n) { coords[a * DIM + n] = latVec[n]; }
      a++;
      for (n = 0; n < DIM; ++n)
      { coords[a * DIM + n] = latVec[n] + FCCshifts[1][n]; }
      a++;
    }
    /* add in the remaining three edges */
    latVec[0] = ((double) i) * FCCspacing;
    latVec[1] = NCELLSPERSIDE * FCCspacing;
    latVec[2] = NCELLSPERSIDE * FCCspacing;
    for (n = 0; n < DIM; ++n) { coords[a * DIM + n] = latVec[n]; }
    a++;
    latVec[0] = NCELLSPERSIDE * FCCspacing;
    latVec[1] = ((double) i) * FCCspacing;
    latVec[2] = NCELLSPERSIDE * FCCspacing;
    for (n = 0; n < DIM; ++n) { coords[a * DIM + n] = latVec[n]; }
    a++;
    latVec[0] = NCELLSPERSIDE * FCCspacing;
    latVec[1] = NCELLSPERSIDE * FCCspacing;
    latVec[2] = ((double) i) * FCCspacing;
    for (n = 0; n < DIM; ++n) { coords[a * DIM + n] = latVec[n]; }
    a++;
  }
  /* add in the remaining corner */
  for (n = 0; n < DIM; ++n)
  { coords[a * DIM + n] = NCELLSPERSIDE * FCCspacing; }
  a++;

  return;
}


void fcc_cluster_neighborlist(int half,
                              int numberOfParticles,
                              double * coords,
                              double cutoff,
                              NeighList * nl)
{
  /* local variables */
  int i;
  int j;
  int k;
  int a;

  double dx[DIM];
  double r2;
  double cutoff2;

  nl->cutoff = cutoff;

  cutoff2 = cutoff * cutoff;

  for (i = 0; i < numberOfParticles; ++i)
  {
    a = 0;
    for (j = 0; j < numberOfParticles; ++j)
    {
      r2 = 0.0;
      for (k = 0; k < DIM; ++k)
      {
        dx[k] = coords[j * DIM + k] - coords[i * DIM + k];
        r2 += dx[k] * dx[k];
      }

      if (r2 < cutoff2)
      {
        if ((half && i < j) || (!half && i != j))
        {
          /* part j is a neighbor of part i */
          (*nl).neighborList[i * NCLUSTERPARTS + a] = j;
          a++;
        }
      }
    }
    /* part i has `a' neighbors */
    (*nl).NNeighbors[i] = a;
  }

  return;
}

int get_cluster_neigh(void * const dataObject,
                      int const numberOfNeighborLists,
                      double const * const cutoffs,
                      int const neighborListIndex,
                      int const particleNumber,
                      int * const numberOfNeighbors,
                      int const ** const neighborsOfParticle)
{
  /* local variables */
  int error = TRUE;
  NeighList * nl = (NeighList *) dataObject;
  int numberOfParticles = nl->numberOfParticles;

  if ((numberOfNeighborLists != 1) || (cutoffs[0] > nl->cutoff)) return error;

  if (neighborListIndex != 0) return error;

  /* initialize numNeigh */
  *numberOfNeighbors = 0;

  if ((particleNumber >= numberOfParticles)
      || (particleNumber < 0)) /* invalid id */
  {
    MY_WARNING("Invalid part ID in get_cluster_neigh");
    return TRUE;
  }

  /* set the returned number of neighbors for the returned part */
  *numberOfNeighbors = (*nl).NNeighbors[particleNumber];

  /* set the location for the returned neighbor list */
  *neighborsOfParticle
      = &((*nl).neighborList[(particleNumber) *numberOfParticles]);

  return FALSE;
}